Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCO0618 | SCO6827 | gene:17758201 | gene:17764486 | SCF56.02, hypothetical protein, len: 461 aa; similar to various hypothetical proteins, e.g. TR:BAA86645 (EMBL:AB033763) Staphylococcus aureus hypothetical 49.4 kD protein, 442 aa; fasta scores: opt: 286 z-score: 318.4 E(): 2.3e-10; 26.6% identity in 466 aa overlap. | SC4A9.04c, polyketide synthase, len: 2358 aa. Highly similar to many including: Stigmatella aurantiaca TR:AAF19813(EMBL:AF188287) polyketide synthase, MtAE, found within the Myxothiazol biosynthetic gene cluster (1947 aa), fasta scores opt: 2671 z-score: 2436.5 E():0 35.8% identity in 1770 aa overlap and Mycobacterium tuberculosis SW:PPSA_MYCTU(EMBL:Z74697) phenolpthiocerol synthesis polyketide synthase gene, PpsA (1876 aa), fasta scores opt: 2221 z-score: 2025.5 E(): 0 33.6% identity in 1761 aa overlap. Contains Prosite hits to PS00606 Beta-ketoacyl synthases active site and 2xPS00012 [...] | 0.861 |
| SCO0618 | SCO7671 | gene:17758201 | gene:17765331 | SCF56.02, hypothetical protein, len: 461 aa; similar to various hypothetical proteins, e.g. TR:BAA86645 (EMBL:AB033763) Staphylococcus aureus hypothetical 49.4 kD protein, 442 aa; fasta scores: opt: 286 z-score: 318.4 E(): 2.3e-10; 26.6% identity in 466 aa overlap. | SC4C2.06c, possible transferase, len: 412 aa; similar to SW:BCSA_BACSU (EMBL:L77246) Bacillus subtilis putative chalcone synthase (EC 2.3.1.74) BcsA, 365 aa; fasta scores: opt: 353 z-score: 334.4 E(): 4.3e-11; 31.0% identity in 339 aa overlap. Contains 2x Pfam matches to entry PF00195 Chal_stil_synt, Chalcone and stilbene synthases and match to Prosite entry PS00196 Type-1 copper (blue) proteins signature. Also contains 9x degenerate repeat: GS. | 0.851 |
| SCO1454 | SCO6827 | gene:17759040 | gene:17764486 | SCL6.11c, possible amino oxidase, len: 565 aa; similar to C-terminal region of SW:TR2M_AGRVI (EMBL:M91609) Agrobacterium vitis tryptophan 2-monooxygenase (EC 1.13.12.3) IaaM (auxins biosynthesis), 723 aa; fasta scores: opt: 617 z-score: 725.3 E(): 5.6e-33; 30.9% identity in 557 aa overlap. Contains Pfam match to entry PF01593 Amino_oxidase, Flavin containing amine oxidase. | SC4A9.04c, polyketide synthase, len: 2358 aa. Highly similar to many including: Stigmatella aurantiaca TR:AAF19813(EMBL:AF188287) polyketide synthase, MtAE, found within the Myxothiazol biosynthetic gene cluster (1947 aa), fasta scores opt: 2671 z-score: 2436.5 E():0 35.8% identity in 1770 aa overlap and Mycobacterium tuberculosis SW:PPSA_MYCTU(EMBL:Z74697) phenolpthiocerol synthesis polyketide synthase gene, PpsA (1876 aa), fasta scores opt: 2221 z-score: 2025.5 E(): 0 33.6% identity in 1761 aa overlap. Contains Prosite hits to PS00606 Beta-ketoacyl synthases active site and 2xPS00012 [...] | 0.488 |
| SCO1454 | SCO7671 | gene:17759040 | gene:17765331 | SCL6.11c, possible amino oxidase, len: 565 aa; similar to C-terminal region of SW:TR2M_AGRVI (EMBL:M91609) Agrobacterium vitis tryptophan 2-monooxygenase (EC 1.13.12.3) IaaM (auxins biosynthesis), 723 aa; fasta scores: opt: 617 z-score: 725.3 E(): 5.6e-33; 30.9% identity in 557 aa overlap. Contains Pfam match to entry PF01593 Amino_oxidase, Flavin containing amine oxidase. | SC4C2.06c, possible transferase, len: 412 aa; similar to SW:BCSA_BACSU (EMBL:L77246) Bacillus subtilis putative chalcone synthase (EC 2.3.1.74) BcsA, 365 aa; fasta scores: opt: 353 z-score: 334.4 E(): 4.3e-11; 31.0% identity in 339 aa overlap. Contains 2x Pfam matches to entry PF00195 Chal_stil_synt, Chalcone and stilbene synthases and match to Prosite entry PS00196 Type-1 copper (blue) proteins signature. Also contains 9x degenerate repeat: GS. | 0.803 |
| SCO1478 | SCO4654 | gene:17759064 | gene:17762303 | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| SCO1478 | SCO4729 | gene:17759064 | gene:17762378 | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| SCO1478 | SCO7671 | gene:17759064 | gene:17765331 | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | SC4C2.06c, possible transferase, len: 412 aa; similar to SW:BCSA_BACSU (EMBL:L77246) Bacillus subtilis putative chalcone synthase (EC 2.3.1.74) BcsA, 365 aa; fasta scores: opt: 353 z-score: 334.4 E(): 4.3e-11; 31.0% identity in 339 aa overlap. Contains 2x Pfam matches to entry PF00195 Chal_stil_synt, Chalcone and stilbene synthases and match to Prosite entry PS00196 Type-1 copper (blue) proteins signature. Also contains 9x degenerate repeat: GS. | 0.782 |
| SCO4654 | SCO1478 | gene:17762303 | gene:17759064 | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | 0.999 |
| SCO4654 | SCO4729 | gene:17762303 | gene:17762378 | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| SCO4654 | SCO5368 | gene:17762303 | gene:17763020 | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.426 |
| SCO4654 | SCO7671 | gene:17762303 | gene:17765331 | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | SC4C2.06c, possible transferase, len: 412 aa; similar to SW:BCSA_BACSU (EMBL:L77246) Bacillus subtilis putative chalcone synthase (EC 2.3.1.74) BcsA, 365 aa; fasta scores: opt: 353 z-score: 334.4 E(): 4.3e-11; 31.0% identity in 339 aa overlap. Contains 2x Pfam matches to entry PF00195 Chal_stil_synt, Chalcone and stilbene synthases and match to Prosite entry PS00196 Type-1 copper (blue) proteins signature. Also contains 9x degenerate repeat: GS. | 0.813 |
| SCO4729 | SCO1478 | gene:17762378 | gene:17759064 | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | 0.999 |
| SCO4729 | SCO4654 | gene:17762378 | gene:17762303 | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| SCO4729 | SCO5368 | gene:17762378 | gene:17763020 | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.809 |
| SCO4729 | SCO6827 | gene:17762378 | gene:17764486 | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | SC4A9.04c, polyketide synthase, len: 2358 aa. Highly similar to many including: Stigmatella aurantiaca TR:AAF19813(EMBL:AF188287) polyketide synthase, MtAE, found within the Myxothiazol biosynthetic gene cluster (1947 aa), fasta scores opt: 2671 z-score: 2436.5 E():0 35.8% identity in 1770 aa overlap and Mycobacterium tuberculosis SW:PPSA_MYCTU(EMBL:Z74697) phenolpthiocerol synthesis polyketide synthase gene, PpsA (1876 aa), fasta scores opt: 2221 z-score: 2025.5 E(): 0 33.6% identity in 1761 aa overlap. Contains Prosite hits to PS00606 Beta-ketoacyl synthases active site and 2xPS00012 [...] | 0.589 |
| SCO4729 | SCO7671 | gene:17762378 | gene:17765331 | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | SC4C2.06c, possible transferase, len: 412 aa; similar to SW:BCSA_BACSU (EMBL:L77246) Bacillus subtilis putative chalcone synthase (EC 2.3.1.74) BcsA, 365 aa; fasta scores: opt: 353 z-score: 334.4 E(): 4.3e-11; 31.0% identity in 339 aa overlap. Contains 2x Pfam matches to entry PF00195 Chal_stil_synt, Chalcone and stilbene synthases and match to Prosite entry PS00196 Type-1 copper (blue) proteins signature. Also contains 9x degenerate repeat: GS. | 0.773 |
| SCO5368 | SCO4654 | gene:17763020 | gene:17762303 | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.426 |
| SCO5368 | SCO4729 | gene:17763020 | gene:17762378 | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.809 |
| SCO5368 | SCO6827 | gene:17763020 | gene:17764486 | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | SC4A9.04c, polyketide synthase, len: 2358 aa. Highly similar to many including: Stigmatella aurantiaca TR:AAF19813(EMBL:AF188287) polyketide synthase, MtAE, found within the Myxothiazol biosynthetic gene cluster (1947 aa), fasta scores opt: 2671 z-score: 2436.5 E():0 35.8% identity in 1770 aa overlap and Mycobacterium tuberculosis SW:PPSA_MYCTU(EMBL:Z74697) phenolpthiocerol synthesis polyketide synthase gene, PpsA (1876 aa), fasta scores opt: 2221 z-score: 2025.5 E(): 0 33.6% identity in 1761 aa overlap. Contains Prosite hits to PS00606 Beta-ketoacyl synthases active site and 2xPS00012 [...] | 0.468 |
| SCO5368 | SCO7671 | gene:17763020 | gene:17765331 | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | SC4C2.06c, possible transferase, len: 412 aa; similar to SW:BCSA_BACSU (EMBL:L77246) Bacillus subtilis putative chalcone synthase (EC 2.3.1.74) BcsA, 365 aa; fasta scores: opt: 353 z-score: 334.4 E(): 4.3e-11; 31.0% identity in 339 aa overlap. Contains 2x Pfam matches to entry PF00195 Chal_stil_synt, Chalcone and stilbene synthases and match to Prosite entry PS00196 Type-1 copper (blue) proteins signature. Also contains 9x degenerate repeat: GS. | 0.765 |
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